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From Wikipedia, the free encyclopedia

Schematic diagram showing anabolism and catabolism

Anabolism (/əˈnæbəlɪzəm/) is the set of metabolic pathways that construct macromolecules like DNA or RNA from smaller units.[1][2] These reactions require energy, known also as an endergonic process.[3] Anabolism is the building-up aspect of metabolism, whereas catabolism is the breaking-down aspect. Anabolism is usually synonymous with biosynthesis.

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Transcription

Textbooks define metabolism, a topic in biochemistry, as a series of chemical reactions that take place inside of our bodies to sustain life. Now, this is a pretty broad definition of metabolism. So in this video, I really want to break this definition down to a more workable understanding of what metabolism really is. So first, I'm going to introduce another arrow in this diagram, like this, and say that really, the requirements of life, let's say in a human being, such as maintaining a constant internal temperature, reproducing, growing, and all that jazz, all of that ultimately boils down to the body's ability to utilize four essential biomolecules. And these four essential biomolecules, or as they're sometimes known as macromolecules, are proteins, fats, carbohydrates, or carbs, and nucleic acids, like DNA and RNA. And ultimately, all of these biomolecules perform different life-sustaining reactions inside of all of the cells in our body to ultimately promote life. So as you can see, we've already begun to break down this definition of metabolism. Essentially what we're saying here is that metabolism is really the study of how we're able to obtain these important biomolecules to sustain life. So how do we obtain these biomolecules? Now, a simple answer to this question is, of course, that we eat food to obtain all of these important biomolecules. But there is an important word of caution here, which is that since most food comes from living organisms like plants and animals, these plants and animals also contain an array of proteins, fats, carbohydrates, nucleic acids, but not necessarily in the same flavor or configuration that our bodies would prefer. So what do our bodies do instead? Well, in our bodies, we go ahead and eat the food. That's a very large head there, but you get the idea. And in our bodies, we break down this food through a process called digestion into the component parts of all of these biomolecules. So what do I mean by component parts? Well, the smallest subunit of proteins is called an amino acid. And our body breaks down all the different types of proteins that we digest into individual amino acids. And the same pattern continues for the rest of the biomolecules. So in the case of fats, we're talking about fatty acids, which are the smallest subunits of fats. And then for carbohydrates, which are long chains of sugars. One of the most common subunits of carbohydrates that our body loves is called glucose. So I'll go ahead and write that here, since you'll be seeing it a lot in the discussion of metabolism. And then finally, for nucleic acids were talking about nucleotides. So at this point, you're probably thinking, well, OK. I understand that our body can't use the same macromolecules found in food because maybe they're not in the right configuration. But how does breaking them down do anything for us? Now the key here is to recognize that in our body there is actually a delicate balance going on between the processes of breaking down molecules, such as in the process of digestion, and then taking these products and building them back up. So essentially, you can see all of these subunits, or monomers, as LEGO pieces that we're essentially reconstructing to build the right configurations of proteins, fats, carbs, and nucleic acids that our body needs. So that's really the key idea here, which is that metabolism is a balance between breaking things down and building them back up in our body so that we can customize, so to say, what type of macromolecules that we create. And just to throw in some vocab words, biochemists call the process of breaking down molecules in our body catabolism. And similar sounding word called anabolism is used to describe the process of building molecules back up. And the way I like to remember this is looking at the first letter of each of these words, I think of C, I think of cutting molecules up into tiny pieces, so breaking them down. And then for anabolism, A, I think of as like the apex of a building, for example. So we're building something up. Now this seems all fine and elegant, but there's one more issue that we need to contend with, which is a consequence of having to balance breaking things down and building them back up. And that is that this process of building molecules back up requires energy. Which I'm kind of indicating here by these yellow lightening bolt stars. So the question I want to answer in this last part of the video is where does this energy come from? Now, the answer to this question is that, well, we also get this energy by eating food. So how does that work? So first, recall that the energy currency of the cell-- and I'm going to go ahead and erase this just to give us some more space. The energy currency of our bodies is a molecule called ATP, or adenosine triphosphate. And this high energy molecule, as it's often referred to, when it is broken down into ADP, so it loses a phosphate group, it releases usable chemical energy that can fuel energy requiring processes in our body, such as the building up process of anabolism. Now, in order for this process to continue non-stop in our bodies, ADP must be regenerated into ATP. And that is where food comes in. So remember that we digest our food into all of these subunits. And some of these subunits, such as glucose and fatty acids mainly, but occasionally amino acids-- I'm going to put that in parentheses-- can essentially be used as fuels in our body. So just like wood, for example, is a fuel for a burning fire, which produces heat, these fuels in our body can essentially be broken down even further to produce the energy that's necessary to convert ADP back into ATP and thus allowing this cycle to continue. And just to throw in another vocabulary word that you'll probably see, this process of taking these fuels, which I've indicated with this asterisk, and breaking them down into usable energy is a process that's referred to as cellular respiration. And recall that because cellular respiration involves breaking down things even further, it's also a catabolic process. So it falls under this category of catabolism. And just to tie everything here together at the end, notice here that another way to interpret this cycling between ATP and ADP is to say that catabolism fuels anabolism. So what do I mean by this? Well, essentially, catabolism, such as the process of breaking things down and extracting energy through processes of cellular respiration, is coupled with this process of building things back up. And so in essence, one relies on the other. And as you can probably guess, these processes are really tightly regulated in our bodies. Because obviously you wouldn't want to be breaking down something while you're building something back up. And in fact, just to give you a preview forward, catabolism and anabolism are often regulated, so controlled, through the use of hormones. So I'm going to write here that hormones are a form of regulation, and tell the body whether it should be in a catabolic or anabolic state.

Pathway

Polymerization, an anabolic pathway used to build macromolecules such as nucleic acids, proteins, and polysaccharides, uses condensation reactions to join monomers.[4] Macromolecules are created from smaller molecules using enzymes and cofactors.

Use of ATP to drive the endergonic process of anabolism.

Energy source

Anabolism is powered by catabolism, where large molecules are broken down into smaller parts and then used up in cellular respiration. Many anabolic processes are powered by the cleavage of adenosine triphosphate (ATP).[5] Anabolism usually involves reduction and decreases entropy, making it unfavorable without energy input.[6] The starting materials, called the precursor molecules, are joined using the chemical energy made available from hydrolyzing ATP, reducing the cofactors NAD+, NADP+, and FAD, or performing other favorable side reactions.[7] Occasionally it can also be driven by entropy without energy input, in cases like the formation of the phospholipid bilayer of a cell, where hydrophobic interactions aggregate the molecules.[8]

Cofactors

The reducing agents NADH, NADPH, and FADH2,[9] as well as metal ions,[4] act as cofactors at various steps in anabolic pathways. NADH, NADPH, and FADH2 act as electron carriers, while charged metal ions within enzymes stabilize charged functional groups on substrates.

Substrates

Substrates for anabolism are mostly intermediates taken from catabolic pathways during periods of high energy charge in the cell.[10]

Functions

Anabolic processes build organs and tissues. These processes produce growth and differentiation of cells and increase in body size, a process that involves synthesis of complex molecules. Examples of anabolic processes include the growth and mineralization of bone and increases in muscle mass.

Anabolic hormones

Endocrinologists have traditionally classified hormones as anabolic or catabolic, depending on which part of metabolism they stimulate. The classic anabolic hormones are the anabolic steroids, which stimulate protein synthesis and muscle growth, and insulin.

Photosynthetic carbohydrate synthesis

Photosynthetic carbohydrate synthesis in plants and certain bacteria is an anabolic process that produces glucose, cellulose, starch, lipids, and proteins from CO2.[6] It uses the energy produced from the light-driven reactions of photosynthesis, and creates the precursors to these large molecules via carbon assimilation in the photosynthetic carbon reduction cycle, a.k.a. the Calvin cycle.[10]

Amino acid biosynthesis from intermediates of glycolysis and the citric acid cycle.

Amino acid biosynthesis

All amino acids are formed from intermediates in the catabolic processes of glycolysis, the citric acid cycle, or the pentose phosphate pathway. From glycolysis, glucose 6-phosphate is a precursor for histidine; 3-phosphoglycerate is a precursor for glycine and cysteine; phosphoenol pyruvate, combined with the 3-phosphoglycerate-derivative erythrose 4-phosphate, forms tryptophan, phenylalanine, and tyrosine; and pyruvate is a precursor for alanine, valine, leucine, and isoleucine. From the citric acid cycle, α-ketoglutarate is converted into glutamate and subsequently glutamine, proline, and arginine; and oxaloacetate is converted into aspartate and subsequently asparagine, methionine, threonine, and lysine.[10]

Glycogen storage

During periods of high blood sugar, glucose 6-phosphate from glycolysis is diverted to the glycogen-storing pathway. It is changed to glucose-1-phosphate by phosphoglucomutase and then to UDP-glucose by UTP--glucose-1-phosphate uridylyltransferase. Glycogen synthase adds this UDP-glucose to a glycogen chain.[10]

Gluconeogenesis

Glucagon is traditionally a catabolic hormone, but also stimulates the anabolic process of gluconeogenesis by the liver, and to a lesser extent the kidney cortex and intestines, during starvation to prevent low blood sugar.[9] It is the process of converting pyruvate into glucose. Pyruvate can come from the breakdown of glucose, lactate, amino acids, or glycerol.[11] The gluconeogenesis pathway has many reversible enzymatic processes in common with glycolysis, but it is not the process of glycolysis in reverse. It uses different irreversible enzymes to ensure the overall pathway runs in one direction only.[11]

Regulation

Anabolism operates with separate enzymes from catalysis, which undergo irreversible steps at some point in their pathways. This allows the cell to regulate the rate of production and prevent an infinite loop, also known as a futile cycle, from forming with catabolism.[10]

The balance between anabolism and catabolism is sensitive to ADP and ATP, otherwise known as the energy charge of the cell. High amounts of ATP cause cells to favor the anabolic pathway and slow catabolic activity, while excess ADP slows anabolism and favors catabolism.[10] These pathways are also regulated by circadian rhythms, with processes such as glycolysis fluctuating to match an animal's normal periods of activity throughout the day.[12]

Etymology

The word anabolism is from Neo-Latin, with roots from Greek: ἀνά, "upward" and βάλλειν, "to throw".

References

  1. ^ Shimizu, Kazuyuki (2013). "Main metabolism". Bacterial Cellular Metabolic Systems. Elsevier. p. 1–54. doi:10.1533/9781908818201.1. ISBN 978-1-907568-01-5.
  2. ^ de Bolster MW (1997). "Glossary of Terms Used in Bioinorganic Chemistry: Anabolism". International Union of Pure and Applied Chemistry. Archived from the original on 30 October 2007. Retrieved 2007-10-30.
  3. ^ Rye C, Wise R, Jurukovski V, Choi J, Avissar Y (2013). Biology. Rice University, Houston Texas: OpenStax. ISBN 978-1-938168-09-3.
  4. ^ a b Alberts B, Johnson A, Julian L, Raff M, Roberts K, Walter P (2002). Molecular Biology of the Cell (5th ed.). CRC Press. ISBN 978-0-8153-3218-3. Archived from the original on 27 September 2017. Retrieved 2018-11-01. Alt URL
  5. ^ Nicholls DG, Ferguson SJ (2002). Bioenergetics (3rd ed.). Academic Press. ISBN 978-0-12-518121-1.
  6. ^ a b Ahern K, Rajagopal I (2013). Biochemistry Free and Easy (PDF) (2nd ed.). Oregon State University.
  7. ^ Voet D, Voet JG, Pratt CW (2013). Fundamentals of biochemistry : life at the molecular level (Fourth ed.). Hoboken, NJ: Wiley. ISBN 978-0-470-54784-7. OCLC 738349533.
  8. ^ Hanin I, Pepeu G (2013-11-11). Phospholipids: biochemical, pharmaceutical, and analytical considerations. New York. ISBN 978-1-4757-1364-0. OCLC 885405600.{{cite book}}: CS1 maint: location missing publisher (link)
  9. ^ a b Jakubowski H (2002). "An Overview of Metabolic Pathways - Anabolism". Biochemistry Online. College of St. Benedict, St. John's University: LibreTexts.
  10. ^ a b c d e f Nelson DL, Lehninger AL, Cox MM (2013). Principles of Biochemistry. New York: W.H. Freeman. ISBN 978-1-4292-3414-6.
  11. ^ a b Berg JM, Tymoczko JL, Stryer L (2002). Biochemistry (5th ed.). New York: W.H. Freeman. ISBN 978-0-7167-3051-4. OCLC 48055706.
  12. ^ Ramsey KM, Marcheva B, Kohsaka A, Bass J (2007). "The clockwork of metabolism". Annual Review of Nutrition. 27: 219–40. doi:10.1146/annurev.nutr.27.061406.093546. PMID 17430084.
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