This article lists the orders of the Bacteria . The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI)[2]
and the phylogeny is based on 16S rRNA-based LTP release 132 by The All-Species Living Tree Project .[3]
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Taxonomy of Bacteria: Identification and Classification
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Phylogeny
National Center for Biotechnology Information (NCBI) taxonomy was initially used to decorate the genome tree via tax2tree. The 16S rRNA-based Greengenes taxonomy is used to supplement the taxonomy particularly in regions of the tree with no cultured representatives. List of Prokaryotic names with Standing in Nomenclature (LPSN) is used as the primary taxonomic authority for establishing naming priorities. Taxonomic ranks are normalised using phylorank and the taxonomy manually curated to remove polyphyletic groups.[4] [5] [6] [7] [8]
Cladogram was taken from GTDB release 08-RS214 (28 April 2023).[9] [10] [11]
Bacteria
"Dormiibacterota"
Armatimonadota
Eremiobacterota
"Thermotogida"
"Synergistetes"
"Thermocalda"
"Fusobacterida"
"Walliibacteriota"
"Muiribacteriota"
"Rifleibacteriota"
"Hydrobacteria "
"Desantisiibacteriota"
"Aerophobota"
"Auribacterota"
"Ratteibacteriota"
"Omnitrophota"
"Spirochaetobacteriobiontes"
"Planctobacteria"
"Hinthialibacterota" (OLB16)
"Sumerlaeota"
"Poribacteriota"
"Abyssubacteria"
"Hydrogenedentota"
"FCB group"
"Coatesiibacteriota" (RBG-13-66-14)
"Fermentibacterota"
"Edwardsiibacteriota"
"Latescibacterota"
"Zixiibacteriota"
"Hydrothermota" (WOR-3)
"Cloacimonadota"
"Proteobacteria"
Acidobacteriota
"Deltabacteria"
"Deferrisomatota" (Desulfobacterota C)
"Deferrimicrobiota" (Desulfobacterota E)
"Aquificida"
"Dadaibacteriota" (Desulfobacterota D)
"Calescibacteriota"
Syntrophorhabdia {Desulfobacterota G}
"Acidulodesulfobacteriota"
Phylogeny of Chloroflexota[9] [10] [11]
"Limnocylindria"
"Limnocylindrales"
Ktedonobacteria
Ktedonobacterales
"Dehalococcoidotia"
Dehalococcoidia
"Caldilineotia"
Ardenticatenales
"Caldilineidae"
Caldilineales
"Anaerolineidae"
"Promineofilales"
Aggregatilineales
Anaerolineales
"Caldilineia"
Class "Bathosphaeria" Mehrshad et al. 2018
?"Bathosphaerales" Mehrshad et al. 2018 [DTDB tag: JG30-KF-CM66]
Class ?"Poriflexia" Kogawa et al. 2022
Class "Umbricyclopia" Mehrshad et al. 2018
?"Umbricyclopales" Mehrshad et al. 2018 (TK10)
Class "Limnocylindria" Mehrshad et al. 2018
"Limnocylindrales" Mehrshad et al. 2018 (SL56)
Class Ktedobacteria corrig. Cavaletti et al. 2007
Ktedobacterales corrig. Cavaletti et al. 2007 (Thermogemmatisporales)
Class Dehalococcoidia Löffler et al. 2013
Class "Caldilineia" Oren, Parte & Garrity 2016 ex Cavalier-Smith 2020
Aggregatilineales Nakahara et al. 2019 ("Phototrophicales")
Anaerolineales Yamada et al. 2006
Ardenticatenales Kawaichi et al. 2013
Caldilineales Yamada et al. 2006
"Roseilineaceae" Ward et al. 2021 {J036}
"Promineifilales" corrig. Chuvochina et al. 2023
Thermoflexales Dodsworth et al. 2014
Class Chloroflexia Gupta et al. 2013
Class "Spiritibacteria" Williams et al. 2024
"Spiritibacterales" Williams et al. 2024
Class "Martimicrobia" Williams et al. 2024
"Martimicrobiales" Williams et al. 2024
Class "Tarhunnaeia" Williams et al. 2024
"Tarhunnaeales" Williams et al. 2024
Class "Uliximicrobia" Williams et al. 2024
"Uliximicrobiales" Williams et al. 2024
Phylum Dormiibacterota
Class "Dormiibacteria" (sic) Montgomery et al. 2021 (AD3)
?"Aeolococcales" Montgomery et al. 2021
"Dormibacterales" (sic) Montgomery et al. 2021
Phylogeny of Armatimonadota[9] [10] [11]
"Heboniibacteriia"
"Heboniibacterales"
"Zipacnadia"
"Zipacnadales"
Abditibacteriia
Abditibacteriales
HRBIN17
HRBIN17
Fimbriimonadia
Fimbriimonadales
Chthonomonadetes
Chthonomonadales
Armatimonadia
Armatimonadales
Capsulimonadales
Class "Heboniibacteriia" corrig. Carlton et al. 2023 (CAIYQO01)
"Heboniibacterales" corrig. Carlton et al. 2023
Class "Zipacnadia" Carlton et al. 2023 (UBA5377)
"Zipacnadales" Carlton et al. 2023
Class Abditibacteriia Tahon et al. 2018 (FBP)
Abditibacteriales Tahon et al. 2018
Class HRBIN17
"Candidatus Fervidibacter" Rinke et al. 2013 {HRBIN17: HRBIN17} (OctSpa1-106)
Class UBA5829
"Candidatus Hippobium" Gilroy et al. 2022 {UBA5829: UBA5829}
Class Fimbriimonadia Im et al. 2012
Fimbriimonadales Im et al. 2012
Class Chthonomonadia Oren, Parte & Garrity 2016
Chthonomonadales Lee et al. 2011
Class Armatimonadia Tamaki et al. 2011 (OP10)
Armatimonadales Tamaki et al. 2011
Capsulimonadales Li, Kudo & Tonouchi 2018
Phylum Eremiobacterota
Phylogeny of Eremiobacterota[9] [10] [11]
"Xenobia"
"Xenobiales"
"Eremiobacteriia"
"Eremiobacterales"
"Baltobacterales"
Class "Eudoremicrobiia" Paoli et al. 2022
?"Eudoremicrobiales" Paoli et al. 2022
Class "Xenobia" Ji et al. 2021 (UBP9)
"Xenobiales" Ji et al. 2021
Class "Eremiobacteriia" corrig. Ward, Cardona & Holland-Moritz 2019 (WPS2)
"Baltobacterales" Ward, Cardona & Holland-Moritz 2019 ("Palusbacterales"; "Rubrimentiphilales"; "Vulcanimicrobiales")
"Eremiobacterales" Ward, Cardona & Holland-Moritz 2019
Firmicutes incertae sedis
Class Desulfitisporia Sorokin & Merkel 2023
Desulfitisporales Sorokin & Merkel 2023
Class Fermentithermobacillia Kadnikov et al. 2023
Fermentithermobacillales Kadnikov et al. 2023
Class Thermolithobacteria Sokolova et al. 2007
Thermolithobacterales Sokolova et al. 2007
Phylum Bacillota E
Phylogeny of Bacillota E[9] [10] [11]
"Thermaerobacteria"
"Thermaerobacterales"
"Symbiobacteriia"
"Symbiobacteriales"
"Sulfobacillia"
"Sulfobacillales"
Class "Thermaerobacteria" Chuvochina et al. 2023
"Thermaerobacterales" Chuvochina et al. 2023
Class UBA3575
"Candidatus Acetocimmeria" Smith et al. 2021 {UBA3575: UBA3575}
Class "Symbiobacteriia" Wang et al. 2021 ex Chuvochina et al. 2023
"Symbiobacteriales" Chuvochina et al. 2023
Class "Sulfobacillia" Chuvochina et al. 2023
"Sulfobacillales" Cavalier-Smith 2020 ex Chuvochina et al. 2023
Phylum Bacillota G
Class Limnochordia Watanabe, Kojima & Fukui 2015
Limnochordales Watanabe, Kojima & Fukui 2015
Class "Hydrogenisporia" Pallen, Rodriguez-R & Alikhan 2022
"Capillibacteriales" Pallen, Rodriguez-R & Alikhan 2022 [UBA10575]
"Hydrogenisporales" Pallen, Rodriguez-R & Alikhan 2022 [UBA8346]
Class "Halanaerobiia" Cavalier-Smith 2020
"Anoxybacterales" Pallen, Rodriguez-R & Alikhan 2022 {DY22613}
Halanaerobiales corrig. Rainey & Zhilina 1995
"Halobacteroidales" Chuvochina et al. 2023
Phylum Bacillota D
Phylogeny of Bacillota D[9] [10] [11]
"Proteinivoracia"
"Proteinivoracales"
Class "Proteinivoracia"
Class "Dethiobacteria" Sorokin & Merkel 2022
"Candidatus Contubernalis" corrig. Zhilina et al. 2005 {SKNC01: SKNC01}
"Dethiobacterales" Sorokin & Merkel 2022
Class "Natranaerobiia" Sorokin et al. 2021 ex Chuvochina et al. 2023
Phylogeny of Selenobacteria[9] [10] [11]
Acidaminococcales
Veillonellales
Class Selenomonadia Oren, Parte & Garrity 2016
Acidaminococcales Campbell, Adeolu & Gupta 2015
"Anaeromusales" Chuvochina et al. 2023
"Dendrosporobacterales" Pallen, Rodriguez-R & Alikhan 2022
"Propionisporales" Chuvochina et al. 2023
Selenomonadales Marchandin et al. 2010
"Acetonemaceae" {Sporomusales_A}
"Sporomusales"_C
"Sporomusales" Cavalier-Smith 2006
"Pelorhabdus " {UMGS1260: UMGS1260}
Veillonellales Campbell, Adeolu & Gupta 2015
Phylum "Desulfotomaculota"
Phylogeny of Desulfotomaculota[9] [10] [11]
"Syntrophomonadia"
"Syntrophomonadales"
"Peptococcia"
"Thermanaerosceptrales"
"Peptococcales"
"Dehalobacteriia"
"Dehalobacteriales"
"Avidehalobacterales"
"Cryptoclostridiales"
"Desulfitobacteriia"
"Heliobacteriales"
"Desulfitobacteriales"
DSM‑12270
"Thermacetogeniales"
"Moorellia"
DULZ01
"Calderihabitantales"
"Desulfitibacterales"
Moorellales
"Carboxydocellia"
"Carboxydocellales"
"Thermincolia"
"Thermincolales"
"Carboxydothermia"
"Carboxydothermales"
"Desulfotomaculia"
"Ammonificales"
"Desulfotomaculales"
Class "Syntrophomonadia" Chuvochina et al. 2023
"Syntrophomonadales" Chuvochina et al. 2023
Class "Peptococcia" Chuvochina et al. 2023
"Peptococcales" Chuvochina et al. 2023
"Thermanaerosceptrales" Pallen, Rodriguez-R & Alikhan 2022 [DRI-13]
Class "Dehalobacteriia"
"Avidehalobacterales" Pallen, Rodriguez-R & Alikhan 2022 [UBA4068]
"Cryptoclostridiales" Pallen, Rodriguez-R & Alikhan 2022 [UBA7702]
"Dehalobacteriales"
Class "Desulfitobacteriia" Chuvochina et al. 2023
"Desulfitobacteriales" Chuvochina et al. 2023
"Heliobacteriales" Cavalier-Smith 2020
Class DSM-12270
"Thermacetogeniales" Chuvochina et al. 2023
Class "Moorellia"
"Calderihabitantales" Chuvochina et al. 2023
"Desulfitibacterales" Chuvochina et al. 2023
Zhaonellaceae Lv et al. 2020 {DULZ01}
Moorellales Lv et al. 2020
Class "Carboxydocellia" Pallen, Rodriguez-R & Alikhan 2022
"Carboxydocellales" Chuvochina et al. 2023
Class "Thermincolia" Chuvochina et al. 2023
"Thermincolales" Chuvochina et al. 2023
Class "Carboxydothermia" Pallen, Rodriguez-R & Alikhan 2022
"Carboxydothermales" Chuvochina et al. 2023
Class "Desulfotomaculia" Watanabe, Fukui & Kuever 2019 ex Chuvochina et al. 2023
"Ammonificales" corrig. Chuvochina et al. 2023
"Desulfotomaculales" Watanabe, Fukui & Kuever 2019 ex Chuvochina et al. 2023
Phylum Bacillota A
Phylogeny of Bacillota A[9] [10] [11]
"Thermoanaerobacteria"
Clostridiia
"Mahellales"
"Caldicoprobacterales"
"Christensenellales"
"Merdicolales"
"Egerieisomatales"
"Saccharofermentanales"
"Acetivibrionales A
"Acetivibrionales"
"Petroclostridiales"
"Monoglobales"
"Avimonoglobales"
"Oscillospirales"
"Lachnospirales"
Class "Thermosediminibacteria" Chuvochina et al. 2023
Class "Thermoanaerobacteria"
"Caldicellulosiruptorales" Bing et al. 2023 ex Chuvochina et al. 2023
Thermoanaerobacterales Wiegel 2010 ["Caldanaerobiales"]
Class Clostridiia Rainey 2010 Oren, Parte & Garrity 2016
"Thermoclostridiaceae" Pallen, Rodriguez-R & Alikhan 2022 {"Acetivibrionales" A}
"Acetivibrionales" Chuvochina et al. 2023
"Avimonoglobales" Pallen, Rodriguez-R & Alikhan 2022 [UBA1381]
"Caldicoprobacterales" Chuvochina et al. 2023
"Christensenellales" Parks et al. 2018 ex Chuvochina et al. 2023 ("Borkfalkiales"; "Comantemales"
)
Clostridiales Prevot 1953 s.s. ("Plectridiales")
"Egerieisomatales" Pallen, Rodriguez-R & Alikhan 2022 [UBA1212]
Eubacteriales Buchanan 1917
"Lachnospirales" Parks et al. 2018 ex Chuvochina et al. 2023
"Lutisporales" Chuvochina et al. 2023
"Mahellales" Chuvochina et al. 2023
"Merdicolales" Pallen, Rodriguez-R & Alikhan 2022 [TANB77]
"Monoglobales" Chuvochina et al. 2023
"Oscillospirales" Glendinning et al. 2020
"Petroclostridiales" Pallen, Rodriguez-R & Alikhan 2022 [SK-Y3]
"Peptostreptococcales" Chuvochina et al. 2023
"Saccharofermentanales" corrig. Parks et al. 2018
Tissierellales Alauzet et al. 2020
Phylogeny of Bacillota[9] [10] [11]
"Bacillia "
"Pasteuriales"
"Kyrpidiales"
"Tumebacillales"
"Alicyclobacillales"
"Desulfuribacillales"
"Calditerricolales"
Bacillales F
"Thermicanales"
"Brockiales"
"Thermoactinomycetales"
DSM-22679
"Tepidibacillales"
"Paenibacillales"
"Aneurinibacillales"
"Brevibacillales"
"Rubeoparvulales"
"Caldalkalibacillales"
Bacillales_K
"Bacillidae"
Bacillales E
Bacillales G
Bacillales H
"Harrysmithimonadales"
"Exiguobacteriales"
Class "Bacillia " Cavalier-Smith 2020
"Alicyclobacillales" Chuvochina et al. 2023
"Aneurinibacillales" Chuvochina et al. 2023
"Bacillidae" Cavalier-Smith 2020 non Enderlein 1917
Bacillales D
Bacillales E
Bacillales G
Bacillales H
Bacillales I
Bacillales Prevot 1953 s.s. (Caryophanales, "Caldibacillales")
"Bacillus thermozeamaize " Mak 2003 {Bacillales F: Bacillaceae_M}
Sporolactobacillaceae Ludwig et al. 2010 {Bacillales_K}
"Brevibacillales" Chuvochina et al. 2023
"Brockiales" Pallen, Rodriguez-R & Alikhan 2022
"Caldalkalibacillales" Chuvochina et al. 2023
"Calditerricolales" Chuvochina et al. 2023
Microaerobacter Khelifi et al. 2011 {DSM-22679: DSM-22679}
"Desulfuribacillales" Sorokin et al. 2021
"Erysipelotrichidae " corrig. Cavalier-Smith 2020
Acholeplasmatales Freundt et al. 1984 (Anaeroplasmatales )
"Aphodocolales" Pallen, Rodriguez-R & Alikhan 2022
"Bathyoplasmales" corrig. Zhu, Lian & He 2020 [MAG-NZ]
Culicoidibacterales Neupane et al. 2020
Erysipelotrichales Ludwig et al. 2010
Haloplasmatales Rainey et al. 2008 non Zhou et al. 2022
"Izemoplasmatales" corrig. Zheng et al. 2021
Mycoplasmatales Freundt 1955 ("Borrelomycetales"; "Anulomycetales"; "Paramycetales"; "Mollicutales"; "Pleuropneumoniales"; Entomoplasmatales , Mycoplasmoidales)
RFN20
"Exiguobacteriales" corrig. Glendinning et al. 2020 ex Chuvochina et al. 2023
"Harrysmithimonadales" Pallen, Rodriguez-R & Alikhan 2022 [CAJFEE01]
"Kyrpidiales" Chuvochina et al. 2023
Lactobacillales Ludwig, Schleifer & Whitman 2010 ("Plocamobacteriales"; "Coccales")
"Paenibacillales" Chuvochina et al. 2023
"Pasteuriales" Pallen, Rodriguez-R & Alikhan 2022 [RES148]
"Rubeoparvulales"
"Staphylococcales" Chuvochina et al. 2023
"Tepidibacillales" Chuvochina et al. 2023
"Thermicanales" Du et al. 2022 ex Chuvochina et al. 2023
"Thermoactinomycetales" Chuvochina et al. 2023
"Tumebacillales" Chuvochina et al. 2023
Phylogeny of Actinomycetota[9] [10] [11]
"Humimicrobiia"
"Hakubellales"
"Humimicrobiales"
"Aquicultoria"
"Aquicultorales"
"Geothermocultorales"
"Oleimmundimicrobiales"
"Subteraquimicrobiales"
"Geothermincolia"
"Geohydrothermomicrobiales"
"Geothermincolales"
Acidimicrobiia
Actinomycetia
Nitriliruptoridae
Actinobacteridae
Class ?"Syntrophaliphaticia" corrig. Liu et al. 2020
Class "Humimicrobiia" Jiao et al. 2021
"Hakubellales" corrig. Merino et al. 2020
"Humimicrobiales" Jiao et al. 2021
Class "Aquicultoria" Jiao et al. 2021
"Aquicultorales" Jiao et al. 2021
"Geothermocultorales" Jiao et al. 2021
"Oleimmundimicrobiales" Pallen, Rodriguez-R & Alikhan 2022 [UBA3085]
"Subteraquimicrobiales" Jiao et al. 2021
Class Coriobacteriia König 2013
Class "Geothermincolia" Jiao et al. 2021
"Geohydrothermomicrobiales" Pallen, Rodriguez-R & Alikhan 2022 [Fen-727]
"Geothermincolales" Jiao et al. 2021
Class Rubrobacteria Suzuki 2013
Class Thermoleophilia Suzuki & Whitman 2013
Class Acidimicrobiia Norris 2013
?"Spongiisociales" corrig. Nguyen 2022
Acidimicrobiales Stackebrandt, Rainey & Ward-Rainey 1997
"Actinomarinales" Ghai et al. 2013
Class "Actinomycetia " Salam et al. 2020
Clade Cyanoprokaryota
Phylum "Margulisiibacteriota"
Phylogeny of Margulisiibacteriota[9] [10] [11]
"Saganbacteria"
"Marinamargulisbacteria"
"Riflemargulisbacteria"
"Termititenacia"
Class "Saganbacteria" Carnevali et al. 2018 (WOR1)
Class "Marinamargulisbacteria" Carnevali et al. 2019
Class "Riflemargulisbacteria" Carnevali et al. 2019 (GWF2_35_9)
Class "Termititenacia" Utami et al. 2019
"Termititenacales" Utami et al. 2019
Phylogeny of Cyanobacteriota[9] [10] [11]
"Melainabacteria "
"Caenarcanales"
"Obscuribacterales"
"Vampirovibrionales"
"Gastranaerophilales"
Class "Melainabacteria " Soo et al. 2014
"Caenarcaniphilales" Soo et al. 2014
"Gastranaerophilales" Di Rienzi et al. 2013
"Obscuribacterales" Soo et al. 2014
"Vampirovibrionales" Soo et al. 2015 ex Chuvochina et al. 2023
Class "Sericytochromatia " Soo et al. 2017
S15B-MN24 ["Sericytochromatia"; "Tanganyikabacteria"]
UBA7694 ["Blackallbacteria"]
Class Gloeobacteria Cavalier-Smith 2002
Class Phycobacteria Cavalier-Smith 2002
Acaryochloridales Miyashita et al. 2003 ex Strunecký & Mareš 2022 ("Thermosynechococcales")
Aegeococcales Strunecký & Mareš 2022
Cyanobacteriales Rippka & Cohen-Bazire 1983 (Chamaesiphonales, Chroococcales , Chroococcidiopsidales , Coleofasciculales, Desertifilales, Nostocales , Oscillatoriales , Pleurocapsales , Spirulinales , Stigonematales )
"Elainellales" Chuvochina et al. 2023
"Eurycoccales"
Gloeoemargaritales Moreira et al. 2016
Leptolyngbyales Strunecký & Mareš 2022 ("Neosynechococcales")
"Limnotrichales"
Nodosilineales Strunecký & Mareš 2022
Oculatellales Strunecký & Mareš 2022
"Phormidesmidales" corrig. Chuvochina et al. 2023
Prochlorococcaceae Komárek & Strunecky 2020 {"PCC-6307"}
Prochlorotrichales Strunecký & Mareš 2022 [PCC-9006]
Pseudanabenales Hoffmann, Komárek & Kastovsky 2005
Synechococcales Hoffmann, Komárek & Kastovsky 2005
Thermostichales Komárek & Strunecký 2020
Clade "Thermotogida"
Class Atribacteria Katayama et al. 2021 (OP9)
Atribacterales Katayama et al. 2021 ("Caldatribacteriales")
Phylum "Lithacetigenota"
Phylum "Thermodesulfobiota"
Class "Thermodesulfobiia" Frolov et al. 2022
"Thermodesulfobiales" Cavalier-Smith 2020
Class "Thermotogia " Oren, Parte & Garrity 2016 ex Cavalier-Smith 2020
Mesoaciditogales Itoh et al. 2016
Petrotogales Bhandari & Gupta 2014 (Kosmotogales)
Thermotogales Reysenbach 2002 emend. Bhandari & Gupta 2014
Clade
Clade "Fusobacterida"
Phylum "Muiribacteriota"
Class "Muiribacteriia" corrig. Chuvochina et al. 2023
"Muiribacteriales" corrig. Chuvochina et al. 2023
Phylum "Rifleibacteriota"
Class "Ozemibacteria" corrig. Kadnikov et al. 2018 (RIF32/ACD39)
"Ozemibacterales" corrig. Kadnikov et al. 2018
Phylum "Macinerneyibacteriota"
Class "Macinerneyibacteriia" corrig. Yadav et al. 2020
"Macinerneyibacteriales" corrig. Yadav et al. 2020
Class Fusobacteriia corrig. Staley & Whitman 2012
Fusobacterales Staley & Whitman 2012 ("Bactepneumoniales")
Phylogeny of Patescibacteria[9] [10] [11]
"Wirthbacteria " (CG2-30-54-11)
"Microgenomates "
"Dojkabacteria"
"Katanobacteria "
"Microgenomatia"
"Woykebacterales"
"Curtissbacterales"
"Daviesbacterales"
"Roizmanbacterales" (UBA1406)
"Gottesmanbacterales" (UBA10105)
"Levybacterales"
"Shapirobacterales" (UBA12405)
GWA2-44-7
"Chazhemtobacteriales"
cluster
"Gracilibacteria"
"Absconditabacteria"
BD1-5
"Absconditabacterales"
"Gracilibacteria"
"Abawacabacterales" (RBG-16-42-10)
"Fertabacterales" (UBA4473)
"Peregrinibacterales" (UBA1369)
"Peribacterales"
cluster
"Saccharibacteria "
"Berkelbacteria "
"Kazanbacteria" (Kazan)
"Howlettbacteria"
"Saccharimonadia"
cluster
"Parcubacteria"
"Andersenbacteria"
"Doudnabacteria"
"Torokbacteria" (GCA-2792135)
ABY1
"Moisslbacterales" (UBA2591)
"Falkowbacterales"
"Buchananbacterales"
"Uhrbacterales" (GWA2-46-9)
"Magasanikbacterales"
"Kuenenbacterales" (UBA2196)
"Jacksonbacterales" (UBA9629)
"Komeilibacterales" (UBA1558)
"Kerfeldbacterales" (SBBC01)
"Veblenbacterales"
"Paceibacteria"
"Moranbacterales"
UBA9983_A
"Paceibacterales"
UBA6257
"Yanofskybacterales" (2-02-FULL-40-12)
"Spechtbacterales"
"Portnoybacterales"
"Parcunitrobacterales" (GWA2-38-13b)
"Azambacterales" (UBA10092)
"Terrybacterales"
cluster
Phylum "Elulota"
Class "Elulimicrobiia" Rodriguez-R et al. 2020
?"Elulimicrobiales" Rodriguez-R et al. 2020
Class "Wirthbacteria "
Class "Dojkabacteria" (WS6)
Class "Katanobacteria " (WWE3)
Class "Microgenomatia"
Clade GWA2-44-7
"Chazhemtobacteriales" Pallen, Rodriguez-R & Alikhan 2022 [UBA1400]
"Curtissbacterales"
"Daviesbacterales"
"Gottesmanbacterales"
"Levybacterales"
"Roizmanbacterales"
"Shapirobacterales"
"Woykebacterales" (RIF34)
Class "Absconditabacteria"
"Absconditabacterales" (sic)Yakimov et al. 2022 (SR1)
"Candidatus Altimarinus" Rinke et al. 2013 {BD1-5: UBA6164} (GN02)
Class "Gracilibacteria "
"Abawacabacterales" (RIF46)
"Fertabacterales" (DOLZORAL124_38_8; "Fallacibacteriota")
"Peregrinibacterales" (PER)
"Peribacterales" Anantharaman et al. 2016
Class "Berkelbacteria " (ACD58)
Class "Kazanbacteria" (Kazan)
Class "Howlettbacteria" (CPR2)
Class "Saccharimonadia" corrig. Lemos et al. 2019 (TM7)
"Saccharimonadales" corrig. Lemos et al. 2019 ex Chuvochina et al. 2023
Class "Andersenbacteria" (RIF9)
Class "Doudnabacteria" (SM2F11)
Class "Torokbacteria" (GCA-2792135)
Class "ABY1"
?"Brownbacterales"
"Buchananbacterales" (RIF37)
"Falkowbacterales"
"Jacksonbacterales" (RIF38)
"Kerfeldbacterales" (RIF4)
"Komeilibacterales" (RIF6)
"Kuenenbacterales"
"Magasanikbacterales"
"Moisslbacterales" [UBA2591]
"Uhrbacterales"
"Veblenbacterales" (RIF39)
Class "Paceibacteria" Chuvochina et al. 2023
"Azambacterales"
Clade UBA6257
Clade UBA9983
Clade UBA9983_A
?"Montesolbacterales"
"Moranbacterales" (OD1-i)
"Paceibacterales" Chuvochina et al. 2023
"Parcunitrobacterales" Castelle et al. 2017
"Portnoybacterales" (RIF22)
"Ryanbacterales" (RIF10)
"Spechtbacterales" (RIF19)
"Sungbacterales" (RIF17)
"Tagabacterales" (RIF12)
"Terrybacterales" (RIF13)
"Yanofskybacterales" (2-02-FULL-40-12)
Clade
Phylum "Bipolaricaulota"
Class "Bipolaricaulia" Chuvochina et al. 2023
"Bipolaricaulales" Chuvochina et al. 2023 (KB1 group, OP1)
"Fraserbacterales" [GTDB tag: RIF31; RBG-16-55-9]
Clade Hydrobacterida
Clade
Phylum "Goldiibacteriota"
"Candidatus Cellulosimonas" Doud et al. 2020
Class "Elusimicrobiia" Oren, Parte & Garrity 2016 ex Cavalier-Smith 2020 (TG1)
"Elusimicrobiales" Geissinger et al. 2010
?"Obscuribacteriales" Uzun et al. 2023
Class "Endomicrobiia" Stingl et al. 2018
"Endomicrobiales" Zheng et al. 2018
Phylum "Aerophobota"
Class "Aerophobia " Chuvochina et al. 2023 (CD12)
"Aerophobales" Chuvochina et al. 2023
Phylum "Auribacterota"
Phylogeny of "Auribacterota"[9] [10] [11]
"Tritonobacteria"
"Tritonobacterales"
"Erginobacteria"
"Erginobacterales"
"Auribacteria"
"Auribacterales"
"Ancaeobacteria"
"Ancaeobacterales"
"Theseobacterales"
Class "Ancaeobacteria" Williams et al. 2022 [UBA6266]
"Ancaeobacterales" Williams et al. 2022
"Theseobacterales" Williams et al. 2022
Class "Auribacteria" Williams et al. 2022 [SURF-26]
"Auribacterales" Williams et al. 2022
Class "Erginobacteria" Williams et al. 2022 [PUNC01]
"Erginobacterales" Williams et al. 2022
Class "Tritonobacteria" Williams et al. 2022 [UBA1439]
"Tritonobacterales" Williams et al. 2022
Phylum "Omnitrophota"
Phylogeny of Omnitrophota[9] [10] [11]
"Omnitrophia"
"Omnitrophales"
"Velamenicoccia"
"Aquiviventales"
"Kaelpiales"
"Tantalellales"
"Gorgyraeales"
"Aquitaenarimonadales"
JABMRG01
"Pluralincolimonadales"
"Taenaricolales"
"Velesiimonadales"
"Duberdicusellales"
"Ghiorseimicrobiales"
"Gygaeellales"
"Velamenicoccales"
"Zapsychrales"
Class "Omnitrophia" (OP3)
Class "Velamenicoccia" Pallen, Rodriguez-R & Alikhan 2022 [Koll11]
?"Kappaeales" Seymour et al. 2022
"Aquitaenarimonadales" Seymour et al. 2022
"Aquiviventales" Seymour et al. 2022
"Duberdicusellales" Seymour et al. 2022
"Ghiorseimicrobiales" Seymour et al. 2022
"Gorgyraeales" Seymour et al. 2023 [UBA10183]
"Gygaeellales" Seymour et al. 2023 [GIF10]
"Candidatus Orphnella" Williams et al. 2021 {JABMRG01: JABMRG01}
"Kaelpiales" Seymour et al. 2022 [4484-49]
"Pluralincolimonadales" Seymour et al. 2022
"Taenaricolales" Seymour et al. 2022
"Tantalellales" Seymour et al. 2022 [SKK-01]
"Velamenicoccales" Pallen, Rodriguez-R & Alikhan 2022 [UBA1572]
"Velesiimonadales" Seymour et al. 2022
"Zapsychrales" Seymour et al. 2022
Clade Spirochaetobacteriobiontes
Phylum "Babelota"
Class "Babeliae" (sic) Yeoh et al. 2016 (TM6)
"Babelales" corrig. Yeoh et al. 2016
Phylogeny of Spirochaetota[9] [10] [11]
"Leptospirae"
"Leptospiria"
"Euspirochaetae"
"Exilispiria"
"Exilispirales"
Spirochaetia
"Borreliales"
"Entomospirales"
DSM-17781
Spirochaetales E
"Sphaerochaetales"
"Marispirochaetales"
"Sediminispirochaetales"
Spirochaetales A
"Salinispirales"
"Treponematales"
Class "Leptospiria" Cavalier-Smith 2020 ex Chuvochina et al. 2023
Leptospirales corrig. Gupta et al. 2014
"Turneriellales" Chuvochina et al. 2023
Class "Brevinematia" Chuvochina et al. 2023
Class "Brachyspiria" corrig. Chuvochina et al. 2023
Class "Exilispiria" Pallen, Rodriguez-R & Alikhan 2022
"Exilispirales" Pallen, Rodriguez-R & Alikhan 2022
Class Spirochaetia Paster 2020
?Spirochaetales Buchanan 1917
"Borreliales" Chuvochina et al. 2023
Spirochaeta cellobiosiphila Breznak & Warnecke 2008 {DSM-17781: DSM-17781}
"Entomospirales" Pallen, Rodriguez-R & Alikhan 2022 [WRBN01]
"Marispirochaetales" Pallen, Rodriguez-R & Alikhan 2022 [JC444]
"Salinispirales" Pallen, Rodriguez-R & Alikhan 2022 [DSM-27196]
"Sediminispirochaetales" Pallen, Rodriguez-R & Alikhan 2022 [DSM-16054]
"Sphaerochaetales" Chuvochina et al. 2023
Spirochaeta thermophila Aksenova et al. 1992 {Spirochaetales_A}
Spirochaetales_E
"Treponematales" Song et al. 2021 ex Chuvochina et al. 2023
Class "Uabimicrobiia" Lodha, Narvekar & Karodi 2021
"Uabimicrobiales" Lodha, Narvekar & Karodi 2021
Class "Brocadiia" JLodha, Narvekar & Karodi 2021
Class Phycisphaeria Oren, Parte & Garrity 2016
Class Planctomycetia Ward 2020
Class Chlamydiia Horn 2011
"Similichlamydiales" Pallen, Rodriguez-R & Alikhan 2022 [Hat2]
Chlamydiales Storz & Page 1971 em. Everett et al. 1999 (Parachlamydiales, "Anoxychlamydiales", "Simkaniales")
Phylogeny of Verrucomicrobiota[9] [10] [11]
Lentisphaeria
Lentisphaerales
Oligosphaerales
Victivallales
Kiritimatiellae
"Spyradenecales"
Kiritimatiellales
"Verrucomicrobiia"
Opitutales
"Limisphaerales"
"Methylacidiphilales"
Terrimicrobiales
Verrucomicrobiales
Class Lentisphaeria Cho et al. 2004
Lentisphaerales Cho et al. 2004
Oligosphaerales Qiu et al. 2013
Victivallales Cho et al. 2004
Class Kiritimatiellae Spring et al. 2017
Kiritimatiellales Spring et al. 2017 [incl. Tichowtungiales]
"Spyradenecales" Pallen, Rodriguez-R & Alikhan 2022 [RFP12]
Class "Verrucomicrobiia" Oren, Parte & Garrity 2016 ex Cavalier-Smith 2020
Opitutales Choo et al. 2007 (Puniceicoccales)
"Limisphaerales" Podosokorskaya et al. 2023
"Methylacidiphilales" Op den Camp 2009 ["Pedosphaerales"]
Terrimicrobiales García-López et al. 2020 ("Chthoniobacterales")
Verrucomicrobiales Ward-Rainey et al. 1996 em. Yoon et al. 2008
Clade
Phylum "Saltatorellota"
Class "Saltatorellae" Wiegand et al. 2019
?"Saltatorellales" Wiegand et al. 2019
Phylum "Hinthialibacterota"
Class "Hinthialibacteria" Williams et al. 2022
"Hinthialibacterales" Williams et al. 2022
Phylum "Sumerlaeota"
Class "Sumerlaeia" Kadnikov et al. 2018
"Sumerlaeales" Kadnikov et al. 2018
Phylum "Poribacteriota"
Class ?"Entoporibacteria" Podell et al. 2019
Class ?"Pelagiporibacteria" Podell et al. 2019
Phylum "Hydrogenedentota"
Class "Hydrogenedentia" Chuvochina et al. 2023 (NKB19)
"Hydrogenedentales" corrig. Chuvochina et al. 2023
Phylum "Heilongiota"
Class "Heilongiia" corrig. Zhang et al. 2022
?"Heilongiales" Zhang et al. 2022
Phylum "Neomarinimicrobiota"
?"Candidatus Neomarinimicrobium" Rinke et al. 2013 corrig. Oren et al. 2020 (Candidate phylum SAR406; candidate phylum Marine Group A)
Phylum "Tianyaibacteriota"
?"Candidatus Tianyaibacterium" corrig. Cui et al. 2021
Phylum "Fermentibacterota"
Class "Fermentibacteria " Kirkegaard 2016 ("Aegiribacteria")
"Fermentibacterales" Kirkegaard 2016 (Hyd24-12)
Phylum "Latescibacterota"
Class "Handelsmanbacteria" (RIF27)
Class "Latescibacteria" Chuvochina et al. 2023
"Latescibacterales" Chuvochina et al. 2023 (WS3)
Phylum "Krumholzibacteriota"
Class "Krumholzibacteriia" corrig. Youssef et al. 2019
"Delphibacterales " (DOLZORAL124_64_63; LZORAL124-64-63)
"Krumholzibacteriales" Youssef et al. 2019 (UBP1)
Class "Glassbacteria" (RIF5)
Class Gemmatimonadetes Zhang et al. 2003
?"Palaucibacterales" Aldeguer-Riquelme, Antón & Santos 2022 [PAUC43f]
Gemmatimonadales Zhang et al. 2003
Longimicrobiales Pascual et al. 2016
Phylum "Hydrothermota"
Class "Stahlbacteria" (WOR-3)
Class "Hydrothermia" Chuvochina et al. 2019 ex Chuvochina et al. 2023
"Hydrothermales" Chuvochina et al. 2019 ex Chuvochina et al. 2023 (EM3)
"Caldipriscales" Pallen, Rodriguez-R & Alikhan 2022 [LBFQ01]
Phylum "Cloacimonadota"
Class "Cloacimonadia" Williams et al. 2021 ex Chuvochina et al. 2023
"Candidatus Celaenobacter" Williams et al. 2021 {JGIOTU-2: JGIOTU-2}
"Cloacimonadales" Williams et al. 2021 ex Chuvochina et al. 2023 (WWE1)
Class "Raymondbacteria" (RIF7)
Class Chitinivibrionia Sorokin et al. 2014
Class Fibrobacteria Spain et al. 2012
Fibrobacterales Spain et al. 2012 ["Fibromonadales"]
Phylum "Electryoneota"
Class "Electryoneia" Williams et al. 2022
Electryoneales Williams et al. 2022
Hatepunaeales Williams et al. 2022
Class "Tariuqbacteria" Vigneron, Vincent & Lovejoy 2023
?Tariuqbacterales Vigneron, Vincent & Lovejoy 2023
Phylum "Marinisomatota"
Class "Marinisomatia"
"Marinisomatales" (SAR406)
Phylum "Cosmopoliota"
Class "Cosmopolitia" (sic) Zhang et al. 2023
"Cosmopoliales" Zhang et al. 2023 (SAR406)
Class Calditrichia Kublanov et al. 2022
Phylogeny of Bacteroidota[9] [10] [11]
"Kapaibacteriia"
"Kapaibacteriales"
Class "Kapaibacteriia" corrig. Chuvochina et al. 2023 (OPB56)
"Kapaibacteriales" corrig. Chuvochina et al. 2023
Class "Kryptonia "
Class "Ignavibacteriia " Oren, Parte & Garrity 2016 ex Cavalier-Smith 2020
Class "Chlorobiia " Oren, Parte & Garrity 2016 ex Cavalier-Smith 2020
Class Rhodothermia Munoz, Rossello-Mora & Amann 2017
Class Bacteroidia Krieg 2012
Phylum "Canglongiota"
Class "Canglongiliia" Zhang et al. 2022
?"Canglongiales" Zhang et al. 2022
Phylogeny of Acidobacteriota[9] [10] [11]
"Fischerbacteria"
"Guanabaribacteriia"
"Guanabaribacteriales"
"Aminicenantia"
"Aminicenantales"
Class "Holophagia " Oren, Parte & Garrity 2016
Class "Fischerbacteria" (RIF25)
Class "Guanabaribacteriia" corrig. Tschoeke et al. 2020
"Guanabaribacteriales" corrig. Tschoeke et al. 2020
Class "Aminicenantia" Chuvochina et al. 2023
"Aminicenantales" Kadnikov et al. 2019 ex Chuvochina et al. 2023 (OP8)
Class Thermoanaerobaculia Dedysh & Yilmaz 2018
Class "Polarisedimenticolia" Flieder et al. 2021
Class Vicinamibacteria Dedysh & Yilmaz 2018
Class Blastocatellia Pascual et al. 2016
?"Frugalibacteriales" Ruhl et al. 2022
Blastocatellales Pascual et al. 2016
"Chloracidobacteriales"
Class Acidobacteriia Thrash & Coates 2010
Phylum SAR324
Class Lambdaproteobacteria Anantharaman et al. 2016 (RIF24)
Phylum Lernaellota
Class "Lernaellia" Williams et al. 2022 [FEN-1099]
"Lernaellales" Williams et al. 2022
Phylum "Binatota"
Class "Binatia" Chuvochina et al. 2019 ex Chuvochina et al. 2023
"Binatales" Chuvochina et al. 2019 ex Chuvochina et al. 2023
Phylogeny of Myxococcota[9] [10] [11]
"Bradymonadia"
Bradymonadales
Polyangia
Haliangiales
Nannocystales
Polyangiales
Class Myxococcia Waite et al. 2020
Myxococcales Tchan, Pochon & Prévot 1948 [Archangiales; "Angiobacteriales"; "Angiococcales"] (fruiting gliding bacteria)
Class "Bradymonadia" corrig. Chuvochina et al. 2023
Bradymonadales Wang et al. 2015
Class Polyangiia corrig. Waite et al. 2020
Haliangiales Waite et al. 2020
Nannocystales (Reichenbach 2007) Waite et al. 2020
Polyangiales Tchan, Pochon & Prevot 1948 [Myxobacterales]
Phylum "Deferrisomatota"
Phylum "Deferrimicrobiota"
Class "Anaeroferrophilia" corrig. Murphy et al. 2021
"Anaeroferrophilales" Murphy et al. 2021
Class "Deferrimicrobiia" corrig. Begmatov et al. 2022
Deferrimicrobiales Begmatov et al. 2022
Phylum "Moduliflexota"
Class "Moduliflexia" Sekiguchi et al. 2015 (KSB3)
"Moduliflexales" Sekiguchi et al. 2015
Phylum "Methylomirabilaeota"
Class "Methylomirabilia" Chuvochina et al. 2023
"Methylomirabilales" Cabrol et al. 2020 ex Chuvochina et al. 2023
"Rokubacteriales"
Phylum "Tectimicrobiota"
Class "Entotheonellia" Chuvochina et al. 2023
"Entotheonellales" Schmidt et al. 2000 ex Chuvochina et al. 2023
Class "Nitrospinia" Lucker et al. 2013
"Nitrospinales" Lucker et al. 2013
Class "Thermodesulfovibrionia" Umezawa et al. 2021
?"Mariimomonadales" Yoon et al. 2023
"Thermodesulfovibrionales" Umezawa et al. 2021 ["Magnetobacteriales"]
Class "Nitrospiria " Oren et al. 2015
"Nitrospirales " Garrity & Holt 2001
"Troglogloeales" Yu et al. 2022 ["Manganitrophales"]
Phylum Desulfobacterota F
Class Desulfuromonadia Waite et al. 2020
Phylogeny of Thermodesulfobacteriota[9] [10] [11]
"Zymogeniia"
"Zymogeniales"
Desulfobulbia
Desulfobulbales
Desulfobaccia
Desulfobaccales
Desulfarculia
"Adiutricales"
Desulfarculales
Class "Zymogeniia" corrig. Murphy et al. 2021
"Zymogeniales" Murphy et al. 2021
Class Desulfomonilia Waite et al. 2020
Class Syntrophia Waite et al. 2020
Class Dissulfuribacteria Waite et al. 2020
Dissulfuribacterales Waite et al. 2020
Class Thermodesulfobacteriia corrig. Hatchikian, Ollivier & Garcia 2002
Class Desulfobulbia Waite et al. 2020
Desulfobulbales Waite et al. 2020
Class Desulfofervidia Waite et al. 2020
"Desulfofervidales" Waite et al. 2020
Class Desulfovibrionia Waite et al. 2020
Class Desulfobaccia Waite et al. 2020
Desulfobaccales Waite et al. 2020
Class Desulfarculia Waite et al. 2020
"Adiutricales" Waite et al. 2020
Desulfarculales corrig. Kuever, Rainey & Widdel 2006
Class Syntrophobacteria Waite et al. 2020
Class "Desulfatiglandia" Pallen, Rodriguez-R & Alikhan 2022 [DSM-4660]
Desulfatiglandales Waite et al. 2020
Class Desulfobacteria Waite et al. 2020
Phylum "Calescibacteriota"
Class "Calescibacteriia" Chuvochina et al. 2023 (EM19)
"Calescibacteriales" Chuvochina et al. 2023
Phylum Desulfobacterota G
Class Syntrophorhabdia Waite et al. 2020
Syntrophorhabdales Waite et al. 2020
Phylum Acidulodesulfobacteriota
Class "Acidulodesulfobacteriia" (sic) Pallen, Rodriguez-R & Alikhan 2022 [SZUA-79]
"Acidulidesulfobacterales" corrig. Tan et al. 2019
Phylum "Thermosulfidibacterota"
Class "Thermosulfidibacteria" Cavalier-Smith 2020 ex Chuvochina et al. 2023
"Thermosulfidibacterales" Cavalier-Smith 2020 ex Chuvochina et al. 2023
Class "Desulfurobacteriia" Chuvochina et al. 2023
Desulfurobacteriales Gupta & Lali 2014
Class "Aquificia " Oren, Parte & Garrity 2016 ex Cavalier-Smith 2020
Aquificales Reysenbach 2002 emend. Gupta & Lali 2013
"Hydrogenothermales" Chuvochina et al. 2023
Phylum Leptospirillaeota
Class "Leptospirillia" Chuvochina et al. 2023
"Leptospirillales" Chuvochina et al. 2023
Class "Anaeropigmentatia" corrig. Murphy et al. 2021
?Anaeropigmentatales corrig. Murphy et al. 2021
Class Caulobacteria " Oren, Parte & Garrity 2016 ex Cavalier-Smith 2020
?"Futianiales" Liu et al. 2022
?"Methylospongiales" Podell et al. 2020
"Enterousiales" Pallen, Rodriguez-R & Alikhan 2022 {Rs-D84}
"Scatocolales" Pallen, Rodriguez-R & Alikhan 2022 {RF32}
Sublass "Rickettsiidae" corrig. Ferla et al. 2013
Phylogeny of "Caulobacteridae"[9] [10] [11]
"Micavibrionales"
"Puniceispirillales"
"Thalassobaculales"
"Marivibrionales"
Rhodospirillales A
"Dongiales"
"Tagaeales"
"Stellales"
"Elsterales"
"Oceanibaculales"
"Reyranellales"
"Planktothermales"
"Tistrellales"
"Geminicoccales"
Sublass "Caulobacteridae " Ferla et al. 2013
"Acetobacterales" Chuvochina et al. 2023
"Caedimonadales"
"Azospirillales" Chuvochina et al. 2023
Caulobacterales Henrici & Johnson 1935 (Hyphomonadales ; Maricaulales ; Parvularculales )
"Dongiales" Chuvochina et al. 2023
"Elsterales" Chuvochina et al. 2023
"Ferrovibrionales" Chuvochina et al. 2023
"Geminicoccales" Chuvochina et al. 2023
Holosporales Szokoli et al. 2016
Hyphomicrobiales Douglas 1957 (Rhizobiales )
"Inquilinales" Pallen, Rodriguez-R & Alikhan 2022 [DSM-16000]
Kiloniellales Wiese et al. 2009
"Marivibrionales" Pallen, Rodriguez-R & Alikhan 2022
"Methylospongiales" Podell et al. 2020
"Micavibrionales"
Micropepsales Harbison et al. 2016
Minwuiales Sun et al. 2018
"Oceanibaculales" Chuvochina et al. 2023
"Paracaedibacterales" Chuvochina et al. 2023
"Parvibaculales"Chuvochina et al. 2023
"Planktothermales" Zhou et al. 2020 [UBA7887]
"Puniceispirillales" Chuvochina et al. 2023
"Reyranellales" Chuvochina et al. 2023
Rhodobacterales Garrity, Bell & Lilburn 2006
Rhodospirillales A
Rhodospirillales Pfennig & Truper 1971
Sphingomonadales Yabuuchi & Kosako 2006 (Emcibacterales ; Iodidimonadales ; Kordiimonadales ; Rhodothalassiales )
Sneathiellales Kurahashi et al. 2008
Stellales Pallen, Rodriguez-R & Alikhan 2022 [ATCC43930]
"Tagaeales" Pallen, Rodriguez-R & Alikhan 2022 [CACIAM-22H2]
"Thalassobaculales" Chuvochina et al. 2023
"Tistrellales" Chuvochina et al. 2023
"Zavarziniales" Chuvochina et al. 2023
Class "Mariprofundia" Cavalier-Smith 2020 ["Zetaproteobacteria"]
Class "Magnetococcia" Parks et al. 2018 ex Chuvochina et al. 2023
Class Pseudomonadia " Oren, Parte & Garrity 2016
?"Ferritrophicales" Weiss et al. 2007
?"Kopriimonadales" Kwon et al. 2005c
?Methylohalomonadales Sorokin & Merkel 2023
?"Rariloculales" Nguyen et al. 2022
?"Spongiifermentales" Nguyen et al. 2023
?"Tethybacterales" Taylor et al. 2021
?"Taraoceanobacteraceae" Zhou et al. 2020 {UBA11654}
Acidiferrobacterales Kojima, Shinohara & Fukui 2015
Arenicellales Teramoto, Yagyu & Nishijima 2015
"Comchoanobacterales" Needham et al. 2022
Enterobacterales Adeolu et al. 2016 ("Bacteriales"; Orbales )
"Foliamicales" Nguyen et al. 2023
Immundisolibacterales Corteselli, Aitken & Singleton 2017
"Johnevansiales" Chuvochina et al. 2023
"Porifericomitales" Nguyen et al. 2023
"Poriferisulfidales" Nguyen et al. 2023 ex Chuvochina et al. 2023
"Thalassomicrobiales" Zhou et al. 2020 [SAR86]
Subclass "Acidithiobacillidae" Cavalier-Smith 2020
Subclass "Neisseriidae" Cavalier-Smith 2020 (Betaproteobacteria )
Phylogeny of "Pseudomonadidae"[9] [10] [11]
"Chromatiae"
"Inmiraniales"
"Thioalbales"
"Tenderiales"
"Sulfuriflexales"
Thiohalospirales
"Thiohalophilales"
Thiohalomonadales
"Reidiellales"
"Thiogranales"
Thiohalobacterales
Halofilales"
"Granulosicoccales"
"Halothiobacillales"
"Competibacterales"
"Nitrococcales"
"Macondimonadales"
Nevskiales
SLND01
"Woeseiales"
"Steroidobacterales"
Xanthomonadales
"Piscirickettsiales"
"Berkiellales"
"Francisellales"
"Aquicellales"
"Diplorickettsiales"
Subclass "Pseudomonadidae" Cavalier-Smith 2020
"Aquicellales" Pallen, Rodriguez-R & Alikhan 2022 [DSM-16500]
Beggiatoales Buchanan 1957
"Berkiellales" Chuvochina et al. 2023
Cardiobacteriales Garrity, Bell & Lilburn 2005
Chromatiales Imhoff 2005
"Competibacterales" Chuvochina et al. 2023
"Coxiellales" Chuvochina et al. 2023
"Diplorickettsiales" Chuvochina et al. 2023
"Ectothiorhodospirales" Chuvochina et al. 2023
"Francisellales" Chuvochina et al. 2023
"Granulosicoccales" Chuvochina et al. 2023
"Halofilales" Pallen, Rodriguez-R & Alikhan 2022
"Halothiobacillales" Chuvochina et al. 2023
"Inmiraniales" Pallen, Rodriguez-R & Alikhan 2022 [DSM-100275]
Legionellales Garrity, Bell & Lilburn 2005
Methylococcales Bowman 2005
"Macondimonadales" Pallen, Rodriguez-R & Alikhan 2022 [UBA5335]
Natronospira Sorokin, Kublanov & Khijniak 2017 {SLND01: SLND01}
Nevskiales Naushad et al. 2015 ("Salinisphaerales")
"Nitrococcales" Chuvochina et al. 2023
"Nitrosococcales" Chuvochina et al. 2023
"Pelagibaculales" Pallen, Rodriguez-R & Alikhan 2022 [HP12]
"Piscirickettsiales" Chuvochina et al. 2023
Pseudomonadales Orla-Jensen 1921 (Cellvibrionales ; Moraxellales; Oceanospirillales )
"Reidiellales" Pallen, Rodriguez-R & Alikhan 2022 [GCF-013343005]
"Riflewellaceae" Zhou et al. 2020 {UBA4486}
"Steroidobacterales" Chuvochina et al. 2023
"Sulfuriflexales" Pallen, Rodriguez-R & Alikhan 2022 [AKS1]
"Tenderiales" Chuvochina et al. 2023
"Thioalbales" Pallen, Rodriguez-R & Alikhan 2022 [DSM-26407]
"Thioglobales" Pallen, Rodriguez-R & Alikhan 2022 [PS1]
"Thiogranales" Pallen, Rodriguez-R & Alikhan 2022 [DSM-19610]
Thiohalobacterales Sorokin & Merkel 2023
Thiohalomonadales Sorokin & Merkel 2023
"Thiohalophilales" Pallen, Rodriguez-R & Alikhan 2022 {UBA6429}
Thiohalospirales Sorokin & Merkel 2023
"Thiomicrospirales" Chuvochina et al. 2023
"Thiopontiales" Pallen, Rodriguez-R & Alikhan 2022 [GCF-002020875]
Thiotrichales Garrity, Bell & Lilburn 2005
"Vibrionales " ("Aerobacterales"; Aeromonadales ; Alteromonadales ; Kangiellales; Pasteurellales )
"Woeseiales" Chuvochina et al. 2023
Xanthomonadales Saddler & Bradbury 2005 non Chadefaud 1950a (Lysobacterales )
List of Candidate Phyla
"Qinglongiota" Zhang et al. 2022
"Salinosulfoleibacteria" Tazi et al. 2006
"Teskebacteria" Dojka 1998 (WS1)
See also
References
^ J.P. Euzéby. "Bacteria" . List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-06-27 .
^ Sayers; et al. "Bacteria" . National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20 .
^ All-Species Living Tree Project ."16S rRNA-based LTP release 132" . Silva Comprehensive Ribosomal RNA Database . Retrieved 2020-08-20 .
^ Parks, DH; Chuvochina, M; Waite, DW; Rinke, C; Skarshewski, A; Chaumeil, PA; Hugenholtz, P (November 2018). "A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life". Nature Biotechnology . 36 (10): 996–1004. bioRxiv 10.1101/256800 . doi :10.1038/nbt.4229 . PMID 30148503 . S2CID 52093100 .
^ Parks, DH; Chuvochina, M; Chaumeil, PA; Rinke, C; Mussig, AJ; Hugenholtz, P (September 2020). "A complete domain-to-species taxonomy for Bacteria and Archaea" . Nature Biotechnology . 38 (9): 1079–1086. bioRxiv 10.1101/771964 . doi :10.1038/s41587-020-0501-8 . PMID 32341564 . S2CID 216560589 .
^ Chaumeil, PA; Mussig, AJ; Hugenholtz, P; Parks, DH (15 November 2019). "GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database" . Bioinformatics . 36 (6): 1925–1927. doi :10.1093/bioinformatics/btz848 . PMC 7703759 . PMID 31730192 .
^ Almeida, Alexandre; Nayfach, Stephen; Boland, Miguel; Strozzi, Francesco; Beracochea, Martin; Shi, Zhou Jason; Pollard, Katherine S.; Sakharova, Ekaterina; Parks, Donovan H.; Hugenholtz, Philip; Segata, Nicola; Kyrpides, Nikos C.; Finn, Robert D. (20 July 2020). "A unified catalog of 204,938 reference genomes from the human gut microbiome" . Nature Biotechnology . 39 (1): 105–114. doi :10.1038/s41587-020-0603-3 . PMC 7801254 . PMID 32690973 .
^ Nayfach, Stephen; et al. (9 November 2020). "A genomic catalog of Earth's microbiomes" . Nature Biotechnology . 39 (4): 499–509. doi :10.1038/s41587-020-0718-6 . PMC 8041624 . PMID 33169036 .
^ a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac "GTDB release 08-RS214" . Genome Taxonomy Database . Retrieved 10 May 2023 .
^ a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac "bac120_r214.sp_label" . Genome Taxonomy Database . Retrieved 10 May 2023 .
^ a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac "Taxon History" . Genome Taxonomy Database . Retrieved 10 May 2023 .
Terrabacteria BV1, BV3, BV5
others Cyanoprokaryota
Cyanobacteriota
"Margulisiibacteriota"
"Marinamargulisbacteria"
"Riflemargulisbacteria"
"Saganbacteria"
"Termititenacia"
Firmicutes BV3 Low GC
Bacillota
Bacillota A
"Clostridiia "
"Thermoanaerobacteria"
"Thermosediminibacteria"
Bacillota D
Bacillota E
"Sulfobacillia"
"Symbiobacteriia"
"Thermaerobacteria"
Bacillota G
"Hydrogenisporia"
Limnochordia
"Desulfotomaculota"
"Carboxydocellia"
"Carboxydothermia"
"Dehalobacteriia"
"Desulfitobacteriia"
"Desulfotomaculia"
"Moorellia"
"Peptococcia"
"Syntrophomonadia"
"Thermincolia"
"Halanaerobiaeota"
"Selenobacteria"
CPR group Thermotogida
Fusobacterida
Fusobacteriota
"Macinerneyibacteriota"
"Muiribacteriota"
"Rifleibacteriota"
"Walliibacteriota"
Hydrobacteria BV2, BV4
Clade 1
"Aerophobota"
"Auribacterota"
"Ancaeobacteria"
"Auribacteria"
"Erginobacteria"
"Tritonobacteria"
"Desantisiibacteriota"
Elusimicrobiota
Elusimicrobiia
Endomicrobiia
"Firestoneibacteriota"
"Goldiibacteriota"
"Omnitrophota"
"Omnitrophia"
"Velamenicoccia"
"Ratteibacteriota"
Clade 2
"Abyssubacteria"
"Hinthialibacterota"
"Hydrogenedentota"
"Poribacteriota "
"Saltatorellota"
"Sumerlaeota"
Spirochaeto bacteriobiontes PVC group (Planctobacteria)FCB group (Sphingobacteria)
Bacteroidota
Calditrichota
"Cloacimonadota"
"Coatesiibacteriota"
"Cosmopoliota"
"Delongiibacteriota"
"Edwardsiibacteriota"
"Eiseniibacteriota"
"Electryoneota"
"Electryoneia"
"Tariuqbacteria"
"Fermentibacterota"
Fibrobacterota
Gemmatimonadota
Gemmatimonadia
"Glassbacteria"
"Heilongiota"
"Hydrothermota"
"Hydrothermia"
"Stahlbacteria"
"Krumholzibacteriota"
"Latescibacterota"
"Handelsmanbacteria"
"Latescibacteria"
"Neomarinimicrobiota "
"Marinisomatota"
"Tianyaibacteriota"
"Zixiibacteriota "
Proteobacteria BV2
others
"Qinglongiota"
"Salinosulfoleibacteria"
"Teskebacteria"
This page was last edited on 23 February 2024, at 07:59