HPS4

HPS4

Identifiers

HPS4, LE, BLOC3S2, biogenesis of lysosomal organelles complex 3 subunit 2, HPS4 biogenesis of lysosomal organelles complex 3 subunit 2

External IDs

OMIM: 606682 MGI: 2177742 HomoloGene: 11123 GeneCards: HPS4

Gene location (Human)

Chr.	Chromosome 22 (human)^[1]

Band	22q12.1	Start	26,443,423 bp^[1]
Band	22q12.1	End	26,483,837 bp^[1]

Gene location (Mouse)

Chr.	Chromosome 5 (mouse)^[2]

Band	5 F\|5 54.69 cM	Start	112,490,949 bp^[2]
Band	5 F\|5 54.69 cM	End	112,526,280 bp^[2]

RNA expression pattern

Bgee

Human

Mouse (ortholog)

Top expressed in

cerebellar hemisphere

sural nerve

skin of abdomen

right uterine tube

anterior pituitary

body of pancreas

gastric mucosa

ganglionic eminence

tibia

left lobe of thyroid gland

Top expressed in

internal carotid artery

external carotid artery

motor neuron

spermatocyte

spermatid

crypt of lieberkuhn of small intestine

retinal pigment epithelium

seminiferous tubule

superior cervical ganglion

facial motor nucleus

More reference expression data

BioGPS


More reference expression data

Gene ontology
Molecular function	protein binding protein homodimerization activity protein dimerization activity guanyl-nucleotide exchange factor activity
Cellular component	cytoplasm melanosome platelet dense granule lysosome BLOC-3 complex membrane cytosol cytoplasmic vesicle
Biological process	hemostasis protein targeting protein stabilization lysosome organization blood coagulation melanocyte differentiation organelle organization positive regulation of eye pigmentation positive regulation of protein targeting to mitochondrion melanosome assembly regulation of molecular function
Sources:Amigo / QuickGO

Orthologs

Species

Human

Mouse

Entrez


89781


192232

Ensembl


ENSG00000100099


ENSMUSG00000042328

UniProt


Q9NQG7


Q99KG7

RefSeq (mRNA)

NM_022081 NM_152840 NM_152841 NM_152842 NM_152843
NM_001349896 NM_001349898 NM_001349899 NM_001349900 NM_001349901 NM_001349902 NM_001349903 NM_001349904 NM_001349905


NM_138646 NM_001359853

RefSeq (protein)

NP_071364 NP_690054 NP_001336825 NP_001336827 NP_001336828
NP_001336829 NP_001336830 NP_001336831 NP_001336832 NP_001336833 NP_001336834 NP_071364.4


NP_619587 NP_001346782

Location (UCSC)

Chr 22: 26.44 – 26.48 Mb

Chr 5: 112.49 – 112.53 Mb

PubMed search

^[3]

^[4]

Wikidata

View/Edit Human

View/Edit Mouse

Hermansky–Pudlak syndrome 4 protein is a protein that in humans is encoded by the HPS4 gene.^[5]^[6]^[7]

Hermansky–Pudlak syndrome is a disorder of organelle biogenesis in which oculocutaneous albinism, bleeding, and pulmonary fibrosis result from defects of melanosomes, platelet dense granules, and lysosomes. Mutations in this gene as well as several others can cause this syndrome. The protein encoded by this gene appears to be important in organelle biogenesis and is similar to the mouse 'light ear' protein. Five transcript variants encoding different isoforms have been found for this gene. In addition, transcript variants utilizing alternative polyadenylation signals exist.^[7]

In melanocytic cells HPS4 gene expression may be regulated by MITF.^[8]

References

^ ^a ^b ^c GRCh38: Ensembl release 89: ENSG00000100099 - Ensembl, May 2017
^ ^a ^b ^c GRCm38: Ensembl release 89: ENSMUSG00000042328 - Ensembl, May 2017
^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ Suzuki T, Li W, Zhang Q, Karim A, Novak EK, Sviderskaya EV, Hill SP, Bennett DC, Levin AV, Nieuwenhuis HK, Fong CT, Castellan C, Miterski B, Swank RT, Spritz RA (Mar 2002). "Hermansky–Pudlak syndrome is caused by mutations in HPS4, the human homolog of the mouse light-ear gene". Nat Genet. 30 (3): 321–4. doi:10.1038/ng835. PMID 11836498. S2CID 2470873.
^ Chiang PW, Oiso N, Gautam R, Suzuki T, Swank RT, Spritz RA (May 2003). "The Hermansky–Pudlak syndrome 1 (HPS1) and HPS4 proteins are components of two complexes, BLOC-3 and BLOC-4, involved in the biogenesis of lysosome-related organelles". J Biol Chem. 278 (22): 20332–7. doi:10.1074/jbc.M300090200. PMID 12663659.
^ ^a ^b "Entrez Gene: HPS4 Hermansky–Pudlak syndrome 4".
^ Hoek KS, Schlegel NC, Eichhoff OM, et al. (2008). "Novel MITF targets identified using a two-step DNA microarray strategy". Pigment Cell Melanoma Res. 21 (6): 665–76. doi:10.1111/j.1755-148X.2008.00505.x. PMID 19067971.

External links

GeneReviews/NCBI/NIH/UW entry on Hermansky–Pudlak syndrome

Bonaldo MF, Lennon G, Soares MB (1997). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Res. 6 (9): 791–806. doi:10.1101/gr.6.9.791. PMID 8889548.
Dunham I, Shimizu N, Roe BA, et al. (1999). "The DNA sequence of human chromosome 22". Nature. 402 (6761): 489–95. Bibcode:1999Natur.402..489D. doi:10.1038/990031. PMID 10591208.
Hirosawa M, Nagase T, Murahashi Y, et al. (2001). "Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping". DNA Res. 8 (1): 1–9. doi:10.1093/dnares/8.1.1. PMID 11258795.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Collins JE, Goward ME, Cole CG, et al. (2003). "Reevaluating human gene annotation: a second-generation analysis of chromosome 22". Genome Res. 13 (1): 27–36. doi:10.1101/gr.695703. PMC 430954. PMID 12529303.
Anderson PD, Huizing M, Claassen DA, et al. (2003). "Hermansky–Pudlak syndrome type 4 (HPS-4): clinical and molecular characteristics". Hum. Genet. 113 (1): 10–7. doi:10.1007/s00439-003-0933-5. PMID 12664304. S2CID 21758434.
Martina JA, Moriyama K, Bonifacino JS (2003). "BLOC-3, a protein complex containing the Hermansky–Pudlak syndrome gene products HPS1 and HPS4". J. Biol. Chem. 278 (31): 29376–84. doi:10.1074/jbc.M301294200. PMID 12756248.
Nazarian R, Falcón-Pérez JM, Dell'Angelica EC (2003). "Biogenesis of lysosome-related organelles complex 3 (BLOC-3): a complex containing the Hermansky–Pudlak syndrome (HPS) proteins HPS1 and HPS4". Proc. Natl. Acad. Sci. U.S.A. 100 (15): 8770–5. Bibcode:2003PNAS..100.8770N. doi:10.1073/pnas.1532040100. PMC 166388. PMID 12847290.
Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
Collins JE, Wright CL, Edwards CA, et al. (2005). "A genome annotation-driven approach to cloning the human ORFeome". Genome Biol. 5 (10): R84. doi:10.1186/gb-2004-5-10-r84. PMC 545604. PMID 15461802.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
Huizing M, Parkes JM, Helip-Wooley A, et al. (2007). "Platelet alpha granules in BLOC-2 and BLOC-3 subtypes of Hermansky–Pudlak syndrome". Platelets. 18 (2): 150–7. doi:10.1080/13576500600936039. PMID 17365864. S2CID 32161968.

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This page was last edited on 29 November 2023, at 03:34

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References

External links

Further reading