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Nucleolar protein, member A1

From Wikipedia, the free encyclopedia

GAR1
Identifiers
AliasesGAR1, NOLA1, Nucleolar protein, member A1, GAR1 ribonucleoprotein
External IDsOMIM: 606468; MGI: 1930948; HomoloGene: 137420; GeneCards: GAR1; OMA:GAR1 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_032993
NM_018983

NM_026578

RefSeq (protein)

NP_061856
NP_127460

NP_080854

Location (UCSC)Chr 4: 109.82 – 109.82 MbChr 3: 129.62 – 129.63 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

H/ACA ribonucleoprotein complex subunit 1 is a protein that in humans is encoded by the GAR1 gene.[5][6]

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Transcription

The job of this mRNA is to carry the gene's message from the DNA out of the nucleus to a ribosome for production of the particular protein that this gene codes for. There can be several million ribosomes in a typical eukaryotic cell. These complex catalytic machines use the mRNA copy of the genetic information to assemble amino acid building blocks into the three-dimensional proteins that are essential for life. Let's see how it works. The ribosome is composed of one large and one small sub unit that assemble around the messenger RNA, which then passes through the ribosome like a computer tape. The amino acid building blocks, that's the small glowing red molecules, are carried into the ribosome attached to specific transfer RNAs; that's the larger green molecules also referred to as tRNA. The small sub unit of the ribosome positions the mRNA so that it can be read in groups of three letters known as a codon. Each codon on the mRNA matches a corresponding anti-codon on the base of a transfer RNA molecule. The larger sub unit of the ribosome removes each amino acid and joins it onto the growing protein chain. As the mRNA is ratcheted through the ribosome, the mRNA sequence is translated into an amino acid sequence. There are three locations inside the ribosome designated the A-Site, the P-Site, and the E-Site. The addition of each amino acid is a three-step cycle; first the tRNA enters the ribosome at the A-Site, and is tested for a codon / anti-codon match with the mRNA. Next, provided there is a correct match, the tRNA is shifted to the P-Site, and the amino acid carries is added to the end of the amino acid chain. The mRNA is also ratcheted on three nucleotides, or one codon. Thirdly, the spent tRNA is moved to the E-Site, and then ejected from the ribosome to be recycled. As the protein synthesis precedes, the finished chain emerges from the ribosome; it folds up into a precise shape, determined by the exact order of amino acids. Thus the central dogma explains how the four-letter DNA code is, quite literally, turned into flesh and blood.

Function

This gene is a member of the H/ACA snoRNPs (small nucleolar ribonucleoproteins) gene family. snoRNPs are involved in various aspects of rRNA processing and modification and have been classified into two families: C/D and H/ACA. The H/ACA snoRNPs also include the DKC1, NOLA2 and NOLA3 proteins. These four H/ACA snoRNP proteins localize to the dense fibrillar components of nucleoli and to coiled (Cajal) bodies in the nucleus. Both 18S rRNA production and rRNA pseudouridylation are impaired if any one of the four proteins is depleted. These four H/ACA snoRNP proteins are also components of the telomerase complex. The encoded protein of this gene contains two glycine- and arginine-rich domains and is related to Saccharomyces cerevisiae Gar1p. Two splice variants have been found for this gene.[6]

Interactions

Nucleolar protein, member A1 has been shown to interact with SMN1.[7]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000109534Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000028010Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Dragon F, Pogacić V, Filipowicz W (May 2000). "In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs". Mol Cell Biol. 20 (9): 3037–48. doi:10.1128/MCB.20.9.3037-3048.2000. PMC 85579. PMID 10757788.
  6. ^ a b "Entrez Gene: NOLA1 nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)".
  7. ^ Pellizzoni L, Baccon J, Charroux B, Dreyfuss G (Jul 2001). "The survival of motor neurons (SMN) protein interacts with the snoRNP proteins fibrillarin and GAR1". Curr. Biol. 11 (14): 1079–88. Bibcode:2001CBio...11.1079P. doi:10.1016/S0960-9822(01)00316-5. PMID 11509230. S2CID 12392702.

Further reading


This page was last edited on 6 April 2024, at 23:29
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