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From Wikipedia, the free encyclopedia

ChEBI
ChEBI logo.png
Content
DescriptionChemical database
Data types
captured
Chemical Entities of Biological Interest
Contact
Research centerEuropean Molecular Biology Laboratory
LaboratoryUnited Kingdom European Bioinformatics Institute
Primary citation[1]
Access
WebsiteChEBI
Download URLDownloads
Web service URLWeb Service
Sparql endpointBIO2RDF
Tools
WebChEBI Website
Miscellaneous
Data release
frequency
monthly
Curation policyManually curated

Chemical Entities of Biological Interest, also known as ChEBI,[1][2] is a database and ontology of molecular entities focused on 'small' chemical compounds, that is part of the Open Biomedical Ontologies effort. The term "molecular entity" refers to any "constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer, etc., identifiable as a separately distinguishable entity".[3] The molecular entities in question are either products of nature or synthetic products which have potential bioactivity. Molecules directly encoded by the genome, such as nucleic acids, proteins and peptides derived from proteins by proteolytic cleavage, are not as a rule included in ChEBI.

ChEBI uses nomenclature, symbolism and terminology endorsed by the International Union of Pure and Applied Chemistry (IUPAC) and Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB).

Scope and access

All data in the database is non-proprietary or is derived from a non-proprietary source. It is thus freely accessible and available to anyone. In addition, each data item is fully traceable and explicitly referenced to the original source.

The ChEBI data is available through a public web interface, Web Service and downloads.

See also

References

  1. ^ a b de Matos P, Alcántara R, Dekker A, Ennis M, Hastings J, Haug K, Spiteri I, Turner S, Steinbeck C (January 2010). "Chemical Entities of Biological Interest: an update". Nucleic Acids Research. 38 (Database issue): D249–54. doi:10.1093/nar/gkp886. PMC 2808869. PMID 19854951.
  2. ^ Degtyarenko K, de Matos P, Ennis M, Hastings J, Zbinden M, McNaught A, Alcántara R, Darsow M, Guedj M, Ashburner M (January 2008). "ChEBI: a database and ontology for chemical entities of biological interest". Nucleic Acids Research. 36 (Database issue): D344–50. doi:10.1093/nar/gkm791. PMC 2238832. PMID 17932057.
  3. ^ IUPAC, Compendium of Chemical Terminology, 2nd ed. (the "Gold Book") (1997). Online corrected version:  (2006–) "molecular entity". doi:10.1351/goldbook.M03986

External links

This page was last edited on 8 February 2019, at 12:05
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